MRIQC: individual T1w report

Summary

Subject ID: 018_ExercisePre.
Date and time: 2018-05-07, 01:45.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3094352285603724
cnr			4.159010863900912
efc			0.5814633592205587
fber			96.35266876220703
fwhm	avg		4.048233333333333
fwhm	x		3.70177
fwhm	y		4.49117
fwhm	z		3.95176
icvs	csf		0.2060129750338058
icvs	gm		0.45402605660558515
icvs	wm		0.3399609683606091
inu	med		0.8476404547691345
inu	range		0.28940606713295003
qi	1		0.0
qi	2		0.0028658824256086253
rpve	csf		26.05318670254473
rpve	gm		13.158283358787614
rpve	wm		20.595870507085706
size	x		180
size	y		256
size	z		256
snr	csf		2.4946806154300094
snr	gm		10.581438831164235
snr	total		10.7669427599646
snr	wm		19.224708833299555
snrd	csf		15.420286911528516
snrd	gm		29.92237733598004
snrd	total		30.2931170825253
snrd	wm		45.536687000067346
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.5107371001007603
summary	bg	mad	14.387215614318848
summary	bg	mean	53.664276123046875
summary	bg	median	52.454933166503906
summary	bg	n	2908113.0
summary	bg	p05	31.65931053161621
summary	bg	p95	80.14055175781249
summary	bg	stdv	15.343666076660156
summary	csf	k	0.5496045925400987
summary	csf	mad	143.46372985839844
summary	csf	mean	346.5785217285156
summary	csf	median	338.639404296875
summary	csf	n	12543.0
summary	csf	p05	145.96975860595705
summary	csf	p95	572.8198181152343
summary	csf	stdv	135.7391815185547
summary	gm	k	0.1808590598780775
summary	gm	mad	59.578369140625
summary	gm	mean	658.5513916015625
summary	gm	median	657.1146240234375
summary	gm	n	40786.0
summary	gm	p05	558.6318359375
summary	gm	p95	763.9722290039062
summary	gm	stdv	62.09992599487305
summary	wm	k	0.9355010997308311
summary	wm	mad	46.52705383300781
summary	wm	mean	999.97900390625
summary	wm	median	1000.014892578125
summary	wm	n	173652.0
summary	wm	p05	913.3709136962891
summary	wm	p95	1084.1567932128905
summary	wm	stdv	52.01701736450195
tpm	overlap	csf	0.20381298661231995
tpm	overlap	gm	0.5278275609016418
tpm	overlap	wm	0.543171226978302
wm2max			0.7406558452195066

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a6f452cf093da7cd0dd0d833e3df1ae2
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.