MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3094352285603724
cnr4.159010863900912
efc0.5814633592205587
fber96.35266876220703
fwhmavg4.048233333333333
fwhmx3.70177
fwhmy4.49117
fwhmz3.95176
icvscsf0.2060129750338058
icvsgm0.45402605660558515
icvswm0.3399609683606091
inumed0.8476404547691345
inurange0.28940606713295003
qi10.0
qi20.0028658824256086253
rpvecsf26.05318670254473
rpvegm13.158283358787614
rpvewm20.595870507085706
sizex180
sizey256
sizez256
snrcsf2.4946806154300094
snrgm10.581438831164235
snrtotal10.7669427599646
snrwm19.224708833299555
snrdcsf15.420286911528516
snrdgm29.92237733598004
snrdtotal30.2931170825253
snrdwm45.536687000067346
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.5107371001007603
summarybgmad14.387215614318848
summarybgmean53.664276123046875
summarybgmedian52.454933166503906
summarybgn2908113.0
summarybgp0531.65931053161621
summarybgp9580.14055175781249
summarybgstdv15.343666076660156
summarycsfk0.5496045925400987
summarycsfmad143.46372985839844
summarycsfmean346.5785217285156
summarycsfmedian338.639404296875
summarycsfn12543.0
summarycsfp05145.96975860595705
summarycsfp95572.8198181152343
summarycsfstdv135.7391815185547
summarygmk0.1808590598780775
summarygmmad59.578369140625
summarygmmean658.5513916015625
summarygmmedian657.1146240234375
summarygmn40786.0
summarygmp05558.6318359375
summarygmp95763.9722290039062
summarygmstdv62.09992599487305
summarywmk0.9355010997308311
summarywmmad46.52705383300781
summarywmmean999.97900390625
summarywmmedian1000.014892578125
summarywmn173652.0
summarywmp05913.3709136962891
summarywmp951084.1567932128905
summarywmstdv52.01701736450195
tpmoverlapcsf0.20381298661231995
tpmoverlapgm0.5278275609016418
tpmoverlapwm0.543171226978302
wm2max0.7406558452195066

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma6f452cf093da7cd0dd0d833e3df1ae2
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.